Link Hybrid 3 to MIDI controller

I try to get Hybrid 3 to work with my Akai MIDI controller. Problem: I mapped all CCs to Hybrid, clicked "save settings as default" in the plug-in settings section. But when I open a new instance some of my mappings are overwritten again. Any idea, what could cause this problem?

Running on Windows 7 with Ableton Live 8.
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